Publications
2012
- Ion-specific counterion condensation on charged peptides: Poisson-Boltzmann vs. atomistic simulations
J. Heyda and J. Dzubiella, Soft Matter, submitted (2012). - Interactions between Proteins and Well-defined Microgels: The Vroman effect revisited
N. Welsch, J. Dzubiella, A. Graebert, and M. Ballauff, submitted (2012). - Catalysis by metallic nanoparticles in aqueous solution: Model reaction
P. Herves, M. Perez-Lorenzo, L. M. Liz-Marzan, J. Dzubiella. Y. Lu, and M. Ballauff, Chem. Soc. Rev., to be published (2012).
- Importance of short range binding and long range solvent interactions in helical anti-freeze peptide activity
S. Ebbinghaus, K. Meister, M. B. Prigozhin, A. L. DeVries, M. Havenith, J. Dzubiella, M. Gruebele, Biophys. J., submitted (2012).
- Peptide Chain Dynamics in Light and Heavy Water: Zooming in on Internal Friction
J. Schulz, L. Schmidt, R. B. Best, J. Dzubiella, R. R. Netz, J. Am. Chem. Soc 134, 6273 (2012) - Synthesis and Characterization of Monodisperse Thermosensitive Dumbbell-shaped microgels
F. Chu, M. Siebenbürger, F. Polzer, C. Stolze, J. Kaiser, M. Hoffmann, N. Heptner, J. Dzubiella, M. Drechsler, Y. Lu, and M. Ballauff
Macromol. Rapid. Comm., to be published (2012).
- Effects of Hofmeister ions on the α-helical structure of proteins
A. H. Crevenna, N. Naredi-Rainer, D. C. Lamb, R. Wedlich-Söldner, J. Dzubiella, Biophys. J. 102, 907 (2012).
- Level-Set Variational Implicit-Solvent Modeling of Biomolecules with the Coulomb-Field Approximation
Z. Wang, J. Che, L. T. Cheng, J. Dzubiella, B. Li, J. A. McCammon, J. Chem. Theory Comp. (JCTC) 8, 386 (2012). - Thermosensitive Au-PNIPA Yolk-Shell Nanoparticles with Tunable Selectivity for Catalysis
S. Wu, J. Dzubiella, J. Kaiser, M. Drechsler, X. Guo, M. Ballauff, Y. Lu, Angewandte Chemie 51, 2229 (2012). - Core-shell microgels as "smart" carriers for enzymes
N. Welsch, A. L. Becker, J. Dzubiella, M. Ballauff, Soft Matter 8, 1428 (2012).
2011
- How Interface Geometry Dictates Water's Thermodynamic Signature in Hydrophobic Association
J. Dzubiella, J. Stat. Phys. 145, 2, 227-239, (2011).
2010
- Ion-specificity in a-helical folding kinetics
Y. von Hansen, I. Kalcher, and J. Dzubiella, J. Phys. Chem. B 114, 13815 (2010).
- Electrolytes in nano-confinement: ion-specific structure and solvation forces
I. Kalcher, J. C. F. Schulz, and J. Dzubiella, J. Chem. Phys. 132, 164511 (2010).
- How the diffusivity profile reduces the arbitrariness of protein folding free energies
M. Hinczewski, Y. von Hansen, J. Dzubiella, and R. R. Netz, J. Chem. Phys. 132, 245103 (2010).
- Molecular insights into the ion-specific kinetics of anionic peptides
J. Dzubiella, J. Phys. Chem. B 114, 7098 (2010).
- Ion-specific excluded-volume correlations and solvation forces
I. Kalcher, J. C. F. Schulz, and J. Dzubiella, Phys. Rev. Lett. 104, 097802 (2010).
- Ionic force field optimization based on single-ion and ion-pair solvation properties
M. Fyta, I. Kalcher, J. Dzubiella, L. Vrbka, and R. R. Netz, J. Chem. Phys. 132, 024911 (2010).
- Ion specificity at the peptide bond: Molecular dynamics simulations of N-methylacetamide in aqueous salt solutions
J. Heyda, J. Vincent, D. Tobias, J. Dzubiella, and P. Jungwirth, J. Phys. Chem. B 114, 1213 (2010).
- Explicit and implict modeling of nanobubbles in hydrophobic confinement
J. Dzubiella, Annals of the Brazilian Academy of Sciences 82, 3 (2010).
2009
- Salt-specific stability of short and charged alanine-based alpha-helices
J. Dzubiella, J. Phys. Chem. B 113, 16689 (2009).
- Dewetting-controlled binding of ligands to hydrophobic pockets
P. Setny, Z. Wang, L.-T. Cheng, B. Li, J. A. McCammon, and J. Dzubiella, Phys. Rev. Lett. 103, 187801 (2009).
- Thermodynamics of multicomponent electrolytes: a MD/HNC hybrid approach
L. Vrbka, M. Lund, I. Kalcher, R. R. Netz, J. Dzubiella, and W. Kunz, J. Chem. Phys. 131, 154109 (2009).
- Interfaces and interactions in hydrophobic receptor-ligand systems: a level-set VISM approach
L.-T. Cheng, Z. Wang, P. Setny, J. Dzubiella, B. Li, and J. A. McCammon, J. Chem. Phys. 131, 144102 (2009).
- Tuning colloidal interactions in subcritical solvents: explicit vs. implicit modeling
J. Dzubiella, J. Chakrabarti, and H. Löwen, J. Chem. Phys. 131, 044513 (2009).
- Ion specific correlations in bulk and at biointerfaces
I. Kalcher, D. Horinek, R. R. Netz, and J. Dzubiella, J. Phys.: Condens. Matter, 21, 424108 (2009).
- Structure - thermodynamics relation of electrolyte solutions
I. Kalcher and J. Dzubiella, J. Chem. Phys. 130, 134507 (2009).
- Tightening the knot in phytochrome by single molecule atomic force microscopy
T. Bornschloegl, D. M. Anstrom, E. Mey, J. Dzubiella, M. T. Rief, and K. Forest, Biophys. J. 96, 1508-1514 (2009).
- Sequence-specific size, structure, and stability of tight protein knots
J. Dzubiella, Biophys. J. 96, 831-839 (2009). Check out Nature Materials' news and views
- Coupling the level-Set method with molecular mechanics for variational implicit solvation of nonpolar molecules
L.-T. Cheng, Y. Xie, J. Dzubiella, J. A. McCammon, J. Che, and B. Li, J. Chem. Theo. Comp. 5, 257 (2009).
2008
- Salt-specific stability and denaturation of a short salt-bridge forming alpha-helix
J. Dzubiella, J. Am. Chem. Soc. 130(42), 14000-14007 (2008).
- Non-equilibrium sedimentation of colloids: Confocal microscopy and Brownian dynamics simulations
M. Schmidt, C. P. Royall, A. van Blaaderen, and J. Dzubiella, J. Phys.: Condens. Matter, 20 494222 (2008).
- Electrostatic free energy and its variations in the implicit solvation of molecules
J. Che, J. Dzubiella, J. A. McCammon, and B. Li, J. Phys. Chem. B 112, 3058 (2008).
- Accurate ion-ion potentials of mean force by the gradient-augmented harmonic fourier beads method
I. V. Khavrutskii, J. Dzubiella, J. A. McCammon, J. Chem. Phys. 128, 044106 (2008).
- Density profiles and solvation forces for a Yukawa fluid in a slit pore
S. Karanikas, J. Dzubiella, A. Moncho-Jorda, and A. A. Louis, J. Chem. Phys. 128, 204704 (2008).
2007
- Application of the level-set method to the solvation of nonpolar molecules
L.-T. Cheng, J. Dzubiella, J. A. McCammon, and B. Li, J. Chem. Phys. 127, 084503 (2007).
- Interface dynamics of microscopic cavities in water
J. Dzubiella, J. Chem. Phys. 126, 194504 (2007).
- Nonequilibrium sedimentation of colloids on the particle scale
P. Royall, J. Dzubiella, M. Schmidt, and A. van Blaaderen, Phys. Rev. Lett. 98, 188304 (2007).
2006
- Coupling polar and nonpolar solvation free energies in implicit solvent models
J. Dzubiella, J. M. J. Swanson, and J. A. McCammon, J. Chem. Phys. 124, 084905 (2006).
- Ultrasoft colloids in cavities of oscillating size or sharpness
M. Rex, C. N. Likos, H. Löwen, and J. Dzubiella, Mol. Phys. 104, 527 (2006).
- Coupling hydrophobicity, dispersion, and electrostatics in continuum solvent models
J. Dzubiella, J. M. J. Swanson, and J. A. McCammon, Phys. Rev. Lett. 96, 087802 (2006).
2005
- Accurate description of bulk and interfacial properties in colloid-polymer mixtures
R. L. C. Vink, A. Jusufi, J. Dzubiella, and C. N. Likos, Phys. Rev. E 72, 030401 (2005).
- Substrate concentration dependence of the diffusion-controlled steady-state rate constant
J. Dzubiella and J. A. McCammon, J. Chem. Phys. 122, 184902 (2005).
- Electric field-controlled water and ion permeation of a hydrophobic nanopore
J. Dzubiella and J.-P. Hansen, J. Chem. Phys. 122, 234706 (2005).
- A density--functional study of interfacial properties of colloid--polymer mixtures
A. Moncho Jorda, J. Dzubiella, J. P. Hansen, and A. A. Louis, J. Phys. Chem. B 109, 6640-6649 (2005).
2004
- Competition of hydrophobic and Coulombic interactions between nanosized solutes
J. Dzubiella and J.-P. Hansen, J. Chem. Phys. 121, 5514-5530 (2004).
- Reentrance effect in the lane formation of driven colloids
J. Chakrabarti, J. Dzubiella, and H. Löwen, Phys. Rev. E 68, 061407 (1-4) (2004).
- Electric field-controlled water permeation coupled to ion transport through a nanopore
J. Dzubiella, R. J. Allen, and J.-P. Hansen, J. Chem. Phys. 120, 5001 (2004).
- Phase diagram of colloid/interacting-polymer mixtures using perturbation theory
B. Rotenberg, J. Dzubiella, A.A. Louis, and J.-P. Hansen, Mol. Phys. 102, 1-11 (2004).
2003
- Dynamic density functional study of a driven colloidal particle in polymer solutions
F. Penna, J. Dzubiella, and P. Tarazona, Phys. Rev. E 68, 061407 (2003).
- Depletion forces in nonequilibrium
J. Dzubiella, H. Löwen, and C. N. Likos, Phys. Rev. Lett. 91, 248301 (2003).
- Reduction of the hydrophobic attraction between charged solutes in water
J. Dzubiella and J.-P. Hansen, J. Chem. Phys. 119, 12049-12052 (2003).
- Mean-field dynamical density functional theory
J. Dzubiella and C. N. Likos, J. Phys.: Condens. Matter 15, L147-L154 (2003).
- Polyelectrolyte-colloid complexes: polarizability and effective interaction
J. Dzubiella, A. Moreira and P. Pincus, Macromolecules 36(5), 1741-1752 (2003).
- Dynamical instabilities in driven colloids
J. Chakrabarti, J. Dzubiella and H. Löwen, Europhys. Lett. 61(3), 415-421 (2003).
- Nonequilibrium pattern formation in strongly interacting driven colloids
H. Löwen and J. Dzubiella, Faraday Discuss. 123, 99-105 (2003).
- Charged colloids, polyelectrolytes and biomolecules viewed as strongly coupled Coulomb systems
H. Löwen, E. Allahyarov, C. N. Likos, R. Blaak, J. Dzubiella, A. Jusufi, N. Hoffmann, H. M. Harreis, J. Phys. A 36, 5827-5834, (2003).
2002
- Pattern formation in driven colloidal mixtures: tilted driving forces and reentrant crystal freezing
J. Dzubiella and H. Löwen, J. Phys.: Condens. Matter 14, 9383 (2002).
- Phase behavior and structure of star polymer-colloid mixtures
J. Dzubiella, C. N. Likos, and H. Löwen, J. Chem. Phys. 116, 9518 ((2002).
- Star-polymers as depleting agents of colloidal hard spheres
J. Dzubiella, C. N. Likos, and H. Löwen, Europhys. Lett. 58, 133-139 (2002).
- Lane formation in colloidal mixtures driven by an external field
J. Dzubiella, G. P. Hoffmann, and H. Löwen, Phys. Rev. E 65, 021402 (2002).
- Partial structure factors in star polymer-colloid mixtures
J. Stellbrink, J. Allgaier, D. Richter, A. Moussaïd, A. B. Schofield, W. C. K. Poon, P. N. Pusey, P. Lindner, J. Dzubiella, C. N. Likos,
and H. Löwen, Appl. Phys. A 74 S355-S357, (2002).
2001
- Effective interactions between star polymers and colloidal particles
A. Jusufi, J. Dzubiella, C. N. Likos, C. von Ferber, and H. Löwen, J. Phys.: Condens. Matter 13, 6177 (2001).
- Phase separation in star polymer-colloid mixtures
J. Dzubiella, A. Jusufi, C. N. Likos, C. von Ferber, H. Löwen, J. Stellbrink, J. Allgaier, D. Richter, A. B. Schofield, P. A. Smith, W. C. K. Poon, and P. N. Pusey, Phys. Rev. E 64, 010401(R) (2001).
- Sedimentation profiles of systems with reentrant melting behavior
J. Dzubiella, H. M. Harreis, C. N. Likos, and H. Löwen, Phys. Rev. E 64, 011405 (2001).
- Interactions and phase transitions of colloidal dispersions in bulk and at interfaces
H. Löwen, E. Allahyarov, J. Dzubiella, C. von Ferber, A. Jusufi, C. N. Likos, and M. Heni, Phil. Trans. Royal Soc. (London) A 359, 909 (2001).
2000
- Topological defects in nematic droplets of hard spherocylinders
J. Dzubiella, M. Schmidt, and H. Löwen, Phys. Rev. E 62, 5081-5091 (2000).
- The hard physics of soft matter
H. Löwen, M. Watzlawek, C. N. Likos, M. Schmidt, A. Jusufi,J. Dzubiella, C. von Ferber, E. Allahyarov, A. Thünemann, and I. D'Amico,
Adv. Sol. State Phys. 40, 809, (2000).
