Department X-Ray Microscopy
Links and Resources for Users
We recommend the following materials for our users. This list is not exhaustive! If there is a software you are interested in or are missing in this list, please contact us.
Tomographic Reconstruction:
These packages are free to use:
Segmentation and visualization:
A broad range of free and commercial segmentation and visualization tools exist.
- Microscopy Image Browser
- Is free to use and well-documented and comes with multiple useful tools and plugins, including Segment Anything (SAM), as well as the possibility to train your own neural networks.
- deep_SXT
- This AI was trained for fully automated segmentation of cellular features and is available under the MIT license (see Dyhr, Sadeghi et al. PNAS 2023).
If you use a resource for cryo-SXT data that you think should be listed here, please get in touch with us!